UCSC Cell Browser
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Help
About
Tutorial
Setup your own cell browser
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Legend
Colors
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Qualitative: Rainbow
Qualitative: Paul Tol's
Gradient: shades of blue
Gradient: shades of red
Gradient: beige to red
Gradient: blue to red
Gradient: Viridis
Gradient: Magma
Gradient: Inferno
Gradient: Plasma
Color By
Annotation
Gene
Color by Annotation
orig.ident
nCount_RNA
nFeature_RNA
sample
condition
celltype
time
celltype.time
exp
sampleid
percent.mt
percent.ribo
RNA_snn_res.0.02
RNA_snn_res.1
seurat_clusters
Cluster
select a field...
Hover over a cell to update data below
Cells selected. No update on hover.
Cell
orig.ident
nCount RNA
nFeature RNA
sample
condition
celltype
time
celltype.time
exp
sampleid
percent.mt
percent.ribo
RNA snn res.0.02
RNA snn res.1
seurat clusters
Cluster
Color by Gene
Recent Genes
Hover or select cells to update colors
Dataset Genes
No genes or peaks defined. Use the setting quickGenesFile in cellbrowser.conf to add a file with gene symbols or peaks that will be shown here
Copy field value to clipboard
Copy field value to clipboard
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Info & Download
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Layout
Seurat umap
Seurat pca
Seurat umap
search for gene...
